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Displaying items by tag: eDNA

Environmental DNA, known as eDNA — one of the most cutting-edge ways to measure ocean health and biodiversity — was collected during The Ocean Race 2022-23 in a world first for racing boats.

11th Hour Racing Team, winners of the six-month long round-the-world race, took samples during the 5,550-nautical-mile Leg 4 from Itajai in Brazil to Newport in Rhode Island, USA in a pioneering initiative of The Ocean Race’s science programme, which aims to support understanding about the state of the seas.

Twenty-seven water samples were gathered between 23 April and 10 May this year and later analysed by the Cawthron Institute, New Zealand’s largest independent science organisation. Each sample included genetic material contained in microbes or shed by thousands of marine species through their waste products and skin cells.

Analysis of this eDNA gives a comprehensive snapshot of the presence and diversity of these species with high accuracy. These data are valuable for a number of reasons, including helping to track endangered species, monitoring diseases and pathogens. And when samples are compared over time, eDNA can provide insights into how the climate crisis is affecting marine life, for example, by shifting their geographic range.

Among the key findings of The Ocean Race eDNA collection was a striking correlation between the abundance of ocean bacteria (Pseudomonas and Acidobacter) that break down plastic and latitude, with analysis showing the highest levels of the bacteria (meaning greater plastic degradation) at lower latitudes near Brazil’s coastline.

Amory Ross lead the eDNA sampling onboard 11th Hour Racing Team | Credit: Amory Ross/11th Hour Racing/The Ocean RaceAmory Ross lead the eDNA sampling onboard 11th Hour Racing Team | Credit: Amory Ross/11th Hour Racing/The Ocean Race

While data from a single boat means that findings aren’t conclusive, The Ocean Race says this discovery highlights the powerful role of this type of eDNA technology and the need for further research. Understanding more about the geographic spread of these bacteria could provide valuable insights to help fight the marine plastic crisis.

Analysis also found that parasitic bacteria (exo or intracellular parasites) — which can be a threat to the health of other species, including humans — are strongly linked with increased sea surface temperature and longitude, with higher abundances closer to landmasses.

With record-breaking ocean temperatures documented in recent months, the influence of changing ocean temperatures on pathogenic microorganisms is another crucial area requiring further research.

Xavier Pochon, team leader of molecular surveillance at the Cawthron Institute and associate professor at the University of Auckland said: “We’re very excited about the data collected during The Ocean Race, particularly those linked with pathogens and plastic degraders. These are interesting findings because very little is known about their distribution and ecology across large latitudinal gradients.

“Our eDNA collection system on racing boats offers significant benefits over traditional research methods as it allows scientists to audit biodiversity from across the tree of life, more rapidly, cheaply and with minimum hands-on time for the sailors. We are looking forward to equipping many more racing boats in the future and propelling our knowledge of marine life into uncharted waters.”

Onboard 11th Hour Racing Team: three eDNA filters from the third sample set, all done and ready for processing with date and time recorded on the bags | Credit: Amory Ross/11th Hour Racing/The Ocean RaceOnboard 11th Hour Racing Team: three eDNA filters from the third sample set, all done and ready for processing with date and time recorded on the bags | Credit: Amory Ross/11th Hour Racing/The Ocean Race

As part of The Ocean Race’s science programme — one of the pillars of the Racing with Purpose sustainability programme that was created with premier partner 11th Hour Racing — the data collection was trialled across one leg of the 32,000nm (60,000 km) race, spanning a latitude of 27 degrees to 39 degrees, to test the feasibility of gathering eDNA on racing boats.

11th Hour Racing Team gathered the samples through an onboard OceanPack: a specialised instrument that measures a range of ocean data, including salinity, temperature, carbon dioxide, oxygen and trace elements.

The equipment worked automatically and continuously throughout the race; eDNA was sampled through the OceanPack — the vessel's existing seawater flow-through system — which pumps two litres of water through innovative eDNA filters for later lab analysis. Trialling eDNA sampling via the OceanPack had the advantage of providing scientists with the opportunity to cross check data and look for links and correlations.

Stefan Raimund, ocean advisor at The Ocean Race said: “Each sample collected contained millions of pieces of eDNA, from single-cell organisms, all the way up to lantern fish and the elusive Moray eel, providing a fascinating snapshot of life below the waves and how it changes throughout the Atlantic Ocean.

The OceanPack is a specialised automated instrument with multiple sensors that measure a range of types of data about the ocean. 11th Hour Racing Team and Team Malizia carried the OceanPack onboard during The Ocean Race 2022-23 | Credit: Cherie Bridges/The Ocean RaceThe OceanPack is a specialised automated instrument with multiple sensors that measure a range of types of data about the ocean. 11th Hour Racing Team and Team Malizia carried the OceanPack onboard during The Ocean Race 2022-23 | Credit: Cherie Bridges/The Ocean Race

“eDNA sampling is at the forefront of biodiversity testing and is a powerful tool for understanding ocean health and how the major threats of climate change and pollution affect it. The more we know about the ocean, the more effectively we can protect it.

“Having successfully trialled the sampling during The Ocean Race 2022-23, we hope to scale it up for future races and have more boats collecting this data, including in remote and vital parts of the ocean, where even less information is available for scientists.”

The potential of eDNA testing for understanding marine biodiversity has been increasingly lauded in the last few years for providing a holistic view of biodiversity without the drawbacks of traditional research methods like catching species and aerial surveys, which can be harmful, expensive and limited. eDNA can also provide fast results, which can be vital given the urgency of the problems impacting the seas.

The data were produced using Illumina next-generation sequencing technology. Cawthron Institute, who specialise in science that supports the environment and sustainable development, was also supported by Sequench Ltd and Smith-Root.

Published in Ocean Race

About Dublin Port 

Dublin Port is Ireland’s largest and busiest port with approximately 17,000 vessel movements per year. As well as being the country’s largest port, Dublin Port has the highest rate of growth and, in the seven years to 2019, total cargo volumes grew by 36.1%.

The vision of Dublin Port Company is to have the required capacity to service the needs of its customers and the wider economy safely, efficiently and sustainably. Dublin Port will integrate with the City by enhancing the natural and built environments. The Port is being developed in line with Masterplan 2040.

Dublin Port Company is currently investing about €277 million on its Alexandra Basin Redevelopment (ABR), which is due to be complete by 2021. The redevelopment will improve the port's capacity for large ships by deepening and lengthening 3km of its 7km of berths. The ABR is part of a €1bn capital programme up to 2028, which will also include initial work on the Dublin Port’s MP2 Project - a major capital development project proposal for works within the existing port lands in the northeastern part of the port.

Dublin Port has also recently secured planning approval for the development of the next phase of its inland port near Dublin Airport. The latest stage of the inland port will include a site with the capacity to store more than 2,000 shipping containers and infrastructures such as an ESB substation, an office building and gantry crane.

Dublin Port Company recently submitted a planning application for a €320 million project that aims to provide significant additional capacity at the facility within the port in order to cope with increases in trade up to 2040. The scheme will see a new roll-on/roll-off jetty built to handle ferries of up to 240 metres in length, as well as the redevelopment of an oil berth into a deep-water container berth.

Dublin Port FAQ

Dublin was little more than a monastic settlement until the Norse invasion in the 8th and 9th centuries when they selected the Liffey Estuary as their point of entry to the country as it provided relatively easy access to the central plains of Ireland. Trading with England and Europe followed which required port facilities, so the development of Dublin Port is inextricably linked to the development of Dublin City, so it is fair to say the origins of the Port go back over one thousand years. As a result, the modern organisation Dublin Port has a long and remarkable history, dating back over 300 years from 1707.

The original Port of Dublin was situated upriver, a few miles from its current location near the modern Civic Offices at Wood Quay and close to Christchurch Cathedral. The Port remained close to that area until the new Custom House opened in the 1790s. In medieval times Dublin shipped cattle hides to Britain and the continent, and the returning ships carried wine, pottery and other goods.

510 acres. The modern Dublin Port is located either side of the River Liffey, out to its mouth. On the north side of the river, the central part (205 hectares or 510 acres) of the Port lies at the end of East Wall and North Wall, from Alexandra Quay.

Dublin Port Company is a State-owned commercial company responsible for operating and developing Dublin Port.

Dublin Port Company is a self-financing, and profitable private limited company wholly-owned by the State, whose business is to manage Dublin Port, Ireland's premier Port. Established as a corporate entity in 1997, Dublin Port Company is responsible for the management, control, operation and development of the Port.

Captain William Bligh (of Mutiny of the Bounty fame) was a visitor to Dublin in 1800, and his visit to the capital had a lasting effect on the Port. Bligh's study of the currents in Dublin Bay provided the basis for the construction of the North Wall. This undertaking led to the growth of Bull Island to its present size.

Yes. Dublin Port is the largest freight and passenger port in Ireland. It handles almost 50% of all trade in the Republic of Ireland.

All cargo handling activities being carried out by private sector companies operating in intensely competitive markets within the Port. Dublin Port Company provides world-class facilities, services, accommodation and lands in the harbour for ships, goods and passengers.

Eamonn O'Reilly is the Dublin Port Chief Executive.

Capt. Michael McKenna is the Dublin Port Harbour Master

In 2019, 1,949,229 people came through the Port.

In 2019, there were 158 cruise liner visits.

In 2019, 9.4 million gross tonnes of exports were handled by Dublin Port.

In 2019, there were 7,898 ship arrivals.

In 2019, there was a gross tonnage of 38.1 million.

In 2019, there were 559,506 tourist vehicles.

There were 98,897 lorries in 2019

Boats can navigate the River Liffey into Dublin by using the navigational guidelines. Find the guidelines on this page here.

VHF channel 12. Commercial vessels using Dublin Port or Dun Laoghaire Port typically have a qualified pilot or certified master with proven local knowledge on board. They "listen out" on VHF channel 12 when in Dublin Port's jurisdiction.

A Dublin Bay webcam showing the south of the Bay at Dun Laoghaire and a distant view of Dublin Port Shipping is here
Dublin Port is creating a distributed museum on its lands in Dublin City.
 A Liffey Tolka Project cycle and pedestrian way is the key to link the elements of this distributed museum together.  The distributed museum starts at the Diving Bell and, over the course of 6.3km, will give Dubliners a real sense of the City, the Port and the Bay.  For visitors, it will be a unique eye-opening stroll and vista through and alongside one of Europe’s busiest ports:  Diving Bell along Sir John Rogerson’s Quay over the Samuel Beckett Bridge, past the Scherzer Bridge and down the North Wall Quay campshire to Berth 18 - 1.2 km.   Liffey Tolka Project - Tree-lined pedestrian and cycle route between the River Liffey and the Tolka Estuary - 1.4 km with a 300-metre spur along Alexandra Road to The Pumphouse (to be completed by Q1 2021) and another 200 metres to The Flour Mill.   Tolka Estuary Greenway - Construction of Phase 1 (1.9 km) starts in December 2020 and will be completed by Spring 2022.  Phase 2 (1.3 km) will be delivered within the following five years.  The Pumphouse is a heritage zone being created as part of the Alexandra Basin Redevelopment Project.  The first phase of 1.6 acres will be completed in early 2021 and will include historical port equipment and buildings and a large open space for exhibitions and performances.  It will be expanded in a subsequent phase to incorporate the Victorian Graving Dock No. 1 which will be excavated and revealed. 
 The largest component of the distributed museum will be The Flour Mill.  This involves the redevelopment of the former Odlums Flour Mill on Alexandra Road based on a masterplan completed by Grafton Architects to provide a mix of port operational uses, a National Maritime Archive, two 300 seat performance venues, working and studio spaces for artists and exhibition spaces.   The Flour Mill will be developed in stages over the remaining twenty years of Masterplan 2040 alongside major port infrastructure projects.

Source: Dublin Port Company ©Afloat 2020.